Showing posts with label Biological invasions. Show all posts
Showing posts with label Biological invasions. Show all posts

Tuesday, February 10, 2015

Charting Our Progress: Evolving Thoughts on Population Dynamics


By: Sarah Solomon

I have always been fascinated by the natural world – by the species that I encounter on a daily basis, and by those that exist on faraway lands. In thinking of how complicated and diverse human population dynamics can be, I’ve always sought to understand how other species’ populations are regulated. Why do some species go extinct, and what prevents others from meeting this same fate?
With ever-increasing human activity around the globe, some species are actually beginning to flourish beyond their natural ranges. From Asian carp to Dog-strangling Vine, the increased abundance and distribution of native and introduced species can be detrimental to the survival of others.
Louis Charles Birch, 1918-2009
University of Sydney

In the early 1940s, Australian insect ecologist Louis Charles Birch began to study how certain species of Dacinae fruit flies were becoming pests as a result of the expansion of cultivated fruit crops. Birch and his supervisor (and would-be lifelong colleague) Herbert Andrewartha were fascinated by the relationship of evolution to ecology, with a particular interest in how evolution can be charted in dynamic species of insects.

At the time of Birch and Andrewartha’s original research on the five most abundant species of fruit flies in eastern Australia, there was a prevailing hypothesis suggesting that all animal populations were self-regulating. This meant that populations of animals would increase under favourable conditions, and that eventually the population would grow so crowded that the birth rate would drop and the death rate would increase – hence the notion of self-regulation. It was believed that once a population reached a low enough density, the pressures on it would decrease and the population would be spared from extinction. Now in a laboratory setting, there was compelling evidence to support this hypothesis, but Birch had a different idea.

What actually happens to populations in nature? Why don’t they become extinct? How might we regulate populations of species that have extended beyond their natural ranges? Birch was part of a generation that started to wonder about these notions as they related to changes in natural environments due to human activities. He decided to look both within and outside of different fruit fly species in order to explore how external factors affect species density and changes in distribution.
In particular, D. tryoni had become a pest to fruit crops spanning the eastern coastal portion of Australia, with a significant increase in its range, adapting to cooler southern temperatures. He was also interested in charting this change – are species actively adapting to environmental changes, and are these changes observable? As it turns out, D. tryoni was even hybridizing with D. neohumeralis – another endemic fruit fly species of eastern Australia – to produce a population of flies with a 15 percent higher survival rate of immature eggs than D. tryoni. And all of this as a result of cultivating more fruit crops across the country!


Thus it seems that Birch was on to something – as it turns out, something very important indeed. It is unclear whether Birch could have anticipated just how much of an impact human activity would have on the environment, and in turn, just how much this change would affect species population dynamics. Today, conservation is at the forefront of science and policy, and the notion of studying the effects of abiotic factors on species population dynamics is imperative.

With scientists like Birch paving the way for thinking beyond the “self-regulating” hypothesis, research groups like that of Australian ecologist Euan Ritchie are committed to producing population models that can help inform conservation policies, and protect at-risk species from extinction.

In a 2009 study, Ritchie and colleagues uncovered how competition between the antilopine wallaroo and its wide-spreading counterpart, the Eastern grey kangaroo, is a threat to the survival of the former species. They also found that habitat – especially changes to landscape and the introduction of cattle ranching – contributed greatly to the viability of these species, and that of the common wallaroo (http://www.ncbi.nlm.nih.gov/pubmed/19175695). This type of modeling research is commonplace in the field of ecology today, as the notion of abiotic factors playing a significant role in species' survival is a widely accepted school of thought. With the growing impacts of climate change becoming more and more evident each day, it seems we have come a long way from the era when Birch’s ideas were considered a minority view.

More than fifty years later, the need to produce sound science with which to inform conservation policy is critical. Since Birch’s kick-start to understanding population dynamics, significant advancements have been made in genetics, and in the technologies for analyzing genetic diversity. Such techniques are helping to further highlight the types of genetic adaptations that Birch started to chart in the 1950s, producing fascinating insights into how populations are disappearing, appearing and adapting to external changes.

Overall, have we made all that much progress since Birch?

I would like to think that in many ways we have, but we still have yet to bridge the gap that exists between sound science and policy enforcement. It seems that despite strides being made on the scientific forefront, useful data are often not used or are discounted by policy decision-makers to suit the goals of various stakeholders. Research, like that of Birch and Andrewartha, and more currently Ritchie and colleagues, has major implications for conservation issues, and particularly for the growing concerns of harmful invasive species (see The Genetics of Colonizing Species).
Share your views, and leave a comment below!


References:
Baker, H. G., and Stebbins, G. L. (1965). The genetics of colonizing species: proceedings. Academic Press Inc.


Ritchie, E. G., Martin, J. K., Johnson, C. N., and Fox, B. J. (2009). Separating the    influences of environment and species interactions on patterns of distribution and abundance: competition between large herbivores. Journal of Animal Ecology, 78,    724-731. doi: 10.1111/j.1365-2656.2008.01520.x



Tuesday, January 27, 2015

50 years of applying theory to ecological problems: where are we now?

Fifty years ago, the seminal volume ‘The Genetics of Colonizing Species’ edited by Herbert G. Baker and G. Ledyard Stebbins was published, and it marked a new phase for the nascent sciences of ecology and evolutionary biology –namely applying theories and concepts to understanding applied issues. Despite the name, this book was not really about genetics, though there were several excellent genetics chapters, what it was really about was the collective flexing of the post-modern synthesis intellectual muscles. Let’s back up for a minute.

The modern synthesis, largely overlooked and forgotten by modern course syllabi, is the single most important event in ecology and evolution since the publication of Darwin’s Origin of the Species. Darwin’s concepts of evolution stand as dogma today, but after publishing his book, Darwin and others recognized that he lacked a crucial mechanism –how organismal characteristics were passed on from parent to offspring. He assumed that whatever the mechanisms, offspring varied in small ways from parents and that there was continuous variation across a population.

For more than 30 years, from about 1900-1930, evolution via natural selection was thought disproven. With the rediscovery of Mendel’s garden pea breeding experiments in 1900, many influential biologists of the day believed that genetic variation was discontinuous in ‘either-or’ states and that abrupt changes typified the appearance of new forms. Famously, this thinking lead to the belief that ‘hopeful monsters’ were produced with some becoming new species instantaneously. This model of speciation was referred to ‘saltationism’

Of course there were heretics, most notably the statisticians who worked with continuous variation (e.g., Karl Pearson, and Ronald Fisher) who refuted the claims made by saltationists in the 1920s. Some notable geneticists changed their position on saltationism because their experiments and observations provided evidence that natural selection was important (most notably T.H. Morgan). However, it wasn't until WWII that the war was won. A group of scientists working on disparate phenomena published a series of books from 1937-1950 that showed how genetics was completely compatible with Darwinian natural selection and could explain a wide variety of observations from populations to biogeography to paleontology. These ‘architects’ and their books were: Theodosius Dobzhansky (Genetics and the Origin of Species); Ernst Mayr (Systematics and the Origin of Species); E. B. Ford (Mendelism and Evolution); George Gaylord Simpson (Tempo and Mode in Evolution); and G. Ledyard Stebbins (Variation and Evolution in Plants). With this, they unified biology and thus the modern synthesis was born.
Now back to the edited volume. Which such a powerful theory, it made sense that there should be a theoretical underpinning to applied ecological problems. The book grew out of a symposium held in Asilomar, California Feb. 12-16, 1964[1], organized by C. H.Waddington, who originally saw an opportunity to bring together thinkers on population genetics. But the book became so much more. According to Baker and Stebbins:
“…the symposium … had as its object the bringing together of geneticists, ecologists, taxonomists and scientists working in some of the more applied phases of ecology –such as wildlife conservation, weed control, and biological control of insect pests.”

Thus the goal was really about modern science and the ability to inform ecological management. The invitees include a few of the ‘architects’ (Dobzhansky, Mayr, and Stebbins) and their academic or intellectual progeny, which includes many of the most important thinkers in ecology and evolution in the 1960s and 70s (Wilson, Lewontin, Sakai, Birch, Harper, etc.).

Given the importance of the Genetics of Colonizing Species in establishing the role that theory might play for applied ecology, it is important to reflect on two important questions: 1) How much have our basic theories advanced in the last 50 years; and perhaps more importantly, 2) has theory provided key insights to solving applied problems?

This book is the fodder for a graduate seminar course I am teaching, and these two questions are the focus of our comparing the chapters to modern papers. Over the next couple of months, students in this course will be contributing blog posts that examine the relationship between the classic chapters and modern work, and they will muse on these two questions. Hopefully by the end of this ongoing dialogue, we will have a better feeling of whether basic theory has advanced our ability to solve applied problems.

Monday, November 10, 2014

To Keep Invasive Asian Carp from the Great Lakes, Carp Catchers Get Creative

*Guest post by Noemie De Vuyst -one of several posts selected from the graduate EES3001 Scientific Literacy course at University of Toronto-Scarborough.

Some say fishing is a peaceful pursuit. Not so if you're one of the self-dubbed Carp-Hunters, a pair of Illinois fishing guides whose carp-catching antics have turned them into YouTube celebrities. Over the last three years, videos of their over-the-top methods have racked up hundreds of thousands of views.

They've netted carp while on water-skis, and speared them with samurai swords and costume Wolverine claws. In Illinois' rivers, the Asian carp are so abundant they practically jump into the outstretched nets themselves. In an ecosystem where the invasive species has largely displaced native fish, the Carp-Hunters’ new hobby has a higher purpose; “We care greatly about preserving out natural ecosystem”, their video’s intro reads. “Since we can’t bass fish anymore we have taken on this burden.”




Silver Carp in the Illinois River, 2009. Nerissa Michaels/Illinois River Biological Station, via Detroit Free Press. 

Kooky as their methods may be, the Carp-Hunters have something in common with government agencies on either side of the Great Lakes; they're both battling the highly invasive Asian carp.
Though the U.S. and Canadian officials may not be going after the invaders with the same flair – not everybody gets to name their fishing boat the “Carpocalypse” - they've been labouring to keep the fish out of the Great Lakes since escapees from fish farms were discovered in the 1990's. With their enormous appetites and extraordinary ability to reproduce at speed, Asian carp would be disastrous to ecosystems and economies if they ever reached the Great Lakes.

First brought to North America in the 1970's, Asian carp already dominate some US waterways. The town of Havana, Illinois, just 85km downstream of Carp-Hunters fishing grounds, is thought to have one of the highest abundances of Asian carp on Earth. Here, the carp make up 60% of the fish community.

The uphill battle to keep carp from the Great Lakes has popped up in the news recently. In early October, the routine testing of 200 sites found a single sample of silver carp environmental DNA (or eDNA) in the Kalamazoo River, a tributary to Lake Michigan.

What does it mean that this one sample tested positive? The presence of eDNA shows only that silver carp material was present at the site. What it can't tell us is whether the carp was alive, or how many fish there might have been. In fact, the presence of eDNA doesn't tell us that a silver carp was present at the site at all; it's possible that scales or tiny amounts of mucous were transported by boats or fishing equipment, or even in bird droppings. With no silver carp sightings in the Kalamazoo, it seems likely the positive result comes from one of these explanations.

Despite the low likelihood that silver carp had really spread to the Great Lakes, news of the positive eDNA result was quickly picked by many local news outlets. Within days, the US Fish and Wildlife Service sped through the collection and testing of 200 more samples, and appealed to anglers to report any carp sightings.

Why such a quick response for a finding with such high uncertainty? If Asian carp were to spread to the Great Lakes, it's feared they take over aquatic ecosystems and cause the fishing and angling industries millions of dollars of loss. Silver carp are especially worrisome, since they have a taste for the same microorganisms and algae that many native species rely on.

By late October, the results of Michigan's second batch of eDNA testing were announced; all samples were negative. For now, it seems the silver carp have crept no closer to the Great Lakes watershed. Canada and the US continue to monitor their waterways closely and to put in new measures to prevent the spread of the fish. This past July, Fisheries and Oceans Canada opened a new Asian Carp Science Lab. In a political climate that has squeezed environmental sciences from all sides, the funding of a new facility highlights the carps' immense potential to cause damage.

So even with their home-built contraptions, it looks like Illinois’ Carp-Catchers are doing their bit for the Great Lakes.


  
For more information on eDNA sampling at the Michigan Department of Natural Resources:
http://www.michigan.gov/dnr/0,4570,7-153--340230--rss,00.html
http://www.asiancarp.us/edna.htm

For details on the new Asian Carp Lab at Fisheries and Oceans Canada:
http://news.gc.ca/web/article-en.do?nid=865809

And to see those Carp-Hunters do their thing:

https://www.youtube.com/watch?v=hN2gMP3Q2Z4